Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs140365411 chr9:72858263 G/T 1.73E-5 493 30.8 31.35 22.45 KM Plot
PRAD rs140400209 chr5:154313399 CCT/C 5.55E-14 492 30.2 34.52 6.3 KM Plot
PRAD rs140631339 chr5:154139651 C/T 0 490 29.8 35.57 4.87 KM Plot
PRAD rs140657199 chr8:71542233 A/C 4.69E-5 492 30.93 31.57 24.27 KM Plot
PRAD rs140681699 chr8:71541244 G/A 4.56E-5 493 31.13 31 24.27 KM Plot
PRAD rs140848183 chr1:93665008 AC/A 1.07E-8 494 31.28 28.67 9.17 KM Plot
PRAD rs141064269 chr8:142203409 A/AC 0.000167 484 29.97 31.65 36.77 KM Plot
PRAD rs141131049 chr5:154268703 T/A 4.81E-14 494 30.08 35.57 6.3 KM Plot
PRAD rs141238808 chr11:24216233 CCATA/C 5.2E-9 494 30.8 37.47 22.92 KM Plot
PRAD rs141426046 chr9:124283628 T/TG 1.79E-6 488 30.97 31.87 24.27 KM Plot
PRAD rs141697408 chr22:18418165 C/T 4.55E-5 487 29.17 33.07 24 KM Plot
PRAD rs141719278 chr11:69237805 TC/T 2.24E-5 490 30.97 29 25.5 KM Plot
PRAD rs1418028 chr20:2050722 C/T 4.02E-7 487 28.77 33.53 29.55 KM Plot
PRAD rs141853536 chr12:10737768 G/GA 6.18E-5 483 30.8 32.9 19.93 KM Plot
PRAD rs142011241 chr2:241769582 CA/C 0.000191 487 29.4 32.5 32.63 KM Plot